_SKIPNAVIGATION
ITA |
ENG
Personale
Recapiti
Pagina Cercachi
Italiano
Pubblicazioni
Insegnamenti
Alberto MAGI
Ruolo attuale:
Professore Associato
SSD:
IBIO-01/A - Bioingegneria
Afferenza organizzativa:
Dipartimento di Ingegneria dell'Informazione
Recapiti
3338170156
alberto.magi(AT)unifi.it
Alberto MAGI
Pubblicazioni
Legenda
Contributo su rivista |
Articolo su libro |
Libro |
Contributo in atti di convegno (proceeding) |
Brevetto |
Curatela |
Altro |
Tesi di Dottorato
Guarnieri Giulia; Lazzerini Letizia; Mencarelli Flavia; Becatti Matteo; Mattei Gianluca; Magi Alberto; Paternostro Ferdinando; Branca Jacopo Junio Valerio; Gulisano Massimo; Pacini Alessandra; Morelli Annamaria; (2024). Benzo[a]pyrene impairs the migratory ability of human GnRH neuroblasts through the inhibition of RhoA/ROCK pathway. ITALIAN JOURNAL OF ANATOMY AND EMBRYOLOGY, vol. 128(1) Supplement:, pp. 64-64, ISSN:1122-6714
Mattei, Gianluca; Baragli, Marta; Gega, Barbara; Mingrino, Alessandra; Chieca, Martina; Ducci, Tommaso; Frigè, Gianmaria; Mazzarella, Luca; D'Aurizio, Romina; De Logu, Francesco; Nassini, Romina; Pelicci, Pier Giuseppe; Magi, Alberto (2024). PoreMeth2: decoding the evolution of methylome alterations with Nanopore sequencing.
DOI
Barbieri G.; Cassioli G.; Kura A.; Orsi R.; Magi A.; Berteotti M.; Scaturro G.M.; Lotti E.; Gori A.M.; Marcucci R.; Giusti B.; Sticchi E. (2024). Digital droplet PCR versus quantitative PCR for lipoprotein (a) kringle IV type 2 repeat polymorphism genetic characterization. JOURNAL OF CLINICAL LABORATORY ANALYSIS, vol. 38, pp. 0-0, ISSN:0887-8013
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Alberto Magi, Gianluca Mattei, Alessandra Mingrino, Chiara Caprioli, Chiara Ronchini, Gianmaria Frigè, Roberto Semeraro, Marta Baragli, Davide Bolognini, Emanuela Colombo, Luca Mazzarella, Pier Giuseppe Pelicci (2023). GASOLINE: detecting germline and somatic structural variants from long-reads data. SCIENTIFIC REPORTS, pp. 0-0, ISSN:2045-2322
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Accesso ONLINE all'editore
Letizia De Chiara, Roberto Semeraro, Benedetta Mazzinghi, Samuela Landini, Alice Molli, Giulia Antonelli, Maria Lucia Angelotti, Maria Elena Melica, Laura Maggi, Carolina Conte, Anna Julie Peired, Luigi Cirillo, Valentina Raglianti, Alberto Magi, Francesco Annunziato, Paola Romagnani, Elena Lazzeri (2023). Polyploid tubular cells initiate a TGF-β1 controlled loop that sustains polyploidization and fibrosis after acute kidney injury. AMERICAN JOURNAL OF PHYSIOLOGY. RENAL PHYSIOLOGY, pp. 849-861, ISSN:1931-857X
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Vanni, Anna; Mazzoni, Alessio; Semeraro, Roberto; Capone, Manuela; Maschmeyer, Patrick; Lamacchia, Giulia; Salvati, Lorenzo; Carnasciali, Alberto; Farahvachi, Parham; Giani, Teresa; Simonini, Gabriele; Filocamo, Giovanni; Romano, Micol; Liotta, Francesco; Mashreghi, Mir-Farzin; Cosmi, Lorenzo; Cimaz, Rolando; Magi, Alberto; Maggi, Laura; Annunziato, Francesco (2023). Clonally expanded PD-1-expressing T cells are enriched in synovial fluid of juvenile idiopathic arthritis patients. EUROPEAN JOURNAL OF IMMUNOLOGY, pp. 0-0, ISSN:0014-2980
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Magi, Alberto; Mattei, Gianluca; Mingrino, Alessandra; Caprioli, Chiara; Ronchini, Chiara; Frigè, Gianmaria; Semeraro, Roberto; Bolognini, Davide; Rambaldi, Alessandro; Candoni, Anna; Colombo, Emanuela; Mazzarella, Luca; Pelicci, Pier Giuseppe (2023). High-resolution Nanopore methylome-maps reveal random hyper-methylation at CpG-poor regions as driver of chemoresistance in leukemias. COMMUNICATIONS BIOLOGY, vol. 6, pp. 0-0, ISSN:2399-3642
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Bruno, Gennaro; Nastasi, Nicoletta; Subbiani, Angela; Boaretto, Alessia; Ciullini Mannurita, Sara; Mattei, Gianluca; Nardini, Patrizia; Della Bella, Chiara; Magi, Alberto; Pini, Alessandro; De Marco, Emanuela; Tondo, Annalisa; Favre, Claudio; Calvani, Maura (2023). β3-adrenergic receptor on tumor-infiltrating lymphocytes sustains IFN-γ-dependent PD-L1 expression and impairs anti-tumor immunity in neuroblastoma. CANCER GENE THERAPY, pp. 0-0, ISSN:0929-1903
DOI
Magini, Pamela; Mingrino, Alessandra; Gega, Barbara; Mattei, Gianluca; Semeraro, Roberto; Bolognini, Davide; Mongelli, Patrizia; Desiderio, Laura; Pittalis, Maria Carla; Pippucci, Tommaso; Magi, Alberto (2022). Third-Generation Cytogenetic Analysis: Diagnostic Application of Long-Read Sequencing. THE JOURNAL OF MOLECULAR DIAGNOSTICS, vol. 24, pp. 711-718, ISSN:1525-1578
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Maria Elena Melica, Giulia Antonelli, Roberto Semeraro, Maria Lucia Angelotti, Gianmarco Lugli, Samuela Landini, Fiammetta Ravaglia, Gilda La Regina, Carolina Conte, Letizia De Chiara, Anna Julie Peired, Benedetta Mazzinghi, Marta Donati, Alice Molli, Stefanie Steiger, Alberto Magi, Niccolò Bartalucci, Valentina Raglianti,, Francesco Guzzi, Laura Maggi, Francesco Annunziato, Alexa Burger, Elena Lazzeri, Hans-Joachim Anders, Laura Lasagni, Paola Romagnani (2022). Differentiation of crescent-forming kidney progenitor cells into podocytes attenuates severe glomerulonephritis in mice. SCIENCE TRANSLATIONAL MEDICINE, pp. 0-0, ISSN:1946-6242
De Chiara, Letizia; Conte, Carolina; Semeraro, Roberto; Diaz-Bulnes, Paula; Angelotti, Maria Lucia; Mazzinghi, Benedetta; Molli, Alice; Antonelli, Giulia; Landini, Samuela; Melica, Maria Elena; Peired, Anna Julie; Maggi, Laura; Donati, Marta; La Regina, Gilda; Allinovi, Marco; Ravaglia, Fiammetta; Guasti, Daniele; Bani, Daniele; Cirillo, Luigi; Becherucci, Francesca; Guzzi, Francesco; Magi, Alberto; Annunziato, Francesco; Lasagni, Laura; Anders, Hans-Joachim; Lazzeri, Elena; Romagnani, Paola (2022). Tubular cell polyploidy protects from lethal acute kidney injury but promotes consequent chronic kidney disease. NATURE COMMUNICATIONS, vol. 13, pp. 0-0, ISSN:2041-1723
DOI
Carangelo, Giulia; Magi, Alberto; Semeraro, Roberto (2022). From multitude to singularity: An up-to-date overview of scRNA-seq data generation and analysis. FRONTIERS IN GENETICS, vol. 13, pp. 0-0, ISSN:1664-8021
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Benelli, Matteo; Franceschini, Gian Marco; Magi, Alberto; Romagnoli, Dario; Biagioni, Chiara; Migliaccio, Ilenia; Malorni, Luca; Demichelis, Francesca (2021). Charting differentially methylated regions in cancer with Rocker-meth. COMMUNICATIONS BIOLOGY, vol. 4, pp. 0-0, ISSN:2399-3642
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Cialdai, Francesca; Bolognini, Davide; Vignali, Leonardo; Iannotti, Nicola; Cacchione, Stefano; Magi, Alberto; Balsamo, Michele; Vukich, Marco; Neri, Gianluca; Donati, Alessandro; Monici, Monica; Capaccioli, Sergio; Lulli, Matteo (2021). Effect of space flight on the behavior of human retinal pigment epithelial ARPE-19 cells and evaluation of coenzyme Q10 treatment. CELLULAR AND MOLECULAR LIFE SCIENCES, pp. 1-19, ISSN:1420-9071
DOI
Bolognini D.; Magi A. (2021). Evaluation of Germline Structural Variant Calling Methods for Nanopore Sequencing Data. FRONTIERS IN GENETICS, vol. 12, pp. 0-0, ISSN:1664-8021
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Martignano F.; Munagala U.; Crucitta S.; Mingrino A.; Semeraro R.; Del Re M.; Petrini I.; Magi A.; Conticello S.G. (2021). Nanopore sequencing from liquid biopsy: analysis of copy number variations from cell-free DNA of lung cancer patients. MOLECULAR CANCER, vol. 20, pp. 32-38, ISSN:1476-4598
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Mazzoni A.; Maggi L.; Capone M.; Vanni A.; Spinicci M.; Salvati L.; Tekle Kiros S.; Semeraro R.; Pengue L.; Colao M.G.; Magi A.; Rossolini G.M.; Liotta F.; Cosmi L.; Bartoloni A.; Annunziato F. (2021). Heterogeneous magnitude of immunological memory to SARS-CoV-2 in recovered individuals. CLINICAL AND TRANSLATIONAL IMMUNOLOGY, vol. 10, pp. e1281-e1281, ISSN:2050-0068
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Sticchi, Elena; Sereni, Alice; Gori, Anna Maria; Magi, Alberto; Della Latta, Daniele; Volta, Andrea; Murri, Alessandra; Jamagidze, Giuli; Chiappino, Dante; Abbate, Rosanna; Gensini, Gian Franco; Marcucci, Rossella; Sofi, Francesco; Giusti, Betti (2020). Genetic and nutritional factors determining circulating levels of lipoprotein(a): results of the "Montignoso Study". INTERNAL AND EMERGENCY MEDICINE, vol. 15, pp. 1239-1245, ISSN:1828-0447
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Davide Bolognini, Alberto Magi, Vladimir Benes, Jan O. Korbel and Tobias Rausch (2020). TRiCoLOR: tandem repeat profiling using whole-genome long-read sequencing data. GIGASCIENCE, pp. 1-7, ISSN:2047-217X
Peired AJ, Antonelli G, Angelotti ML, Allinovi M, Guzzi F, Sisti A, Semeraro R, Conte C, Mazzinghi B, Nardi S, Melica ME, De Chiara L, Lazzeri E, Lasagni L, Lottini T, Landini S, Giglio S, Mari A, Di Maida F, Antonelli A, Porpiglia F, Schiavina R, Ficarra V, Facchiano D, Gacci M, Serni S, Carini M, Netto GJ, Roperto RM, Magi A, Christiansen CF, Rotondi M, Liapis H, Anders HJ, Minervini A, Raspollini MR, Romagnani P. (2020). Acute kidney injury promotes development of papillary renal cell adenoma and carcinoma from renal progenitor cells.. SCIENCE TRANSLATIONAL MEDICINE, pp. 0-0, ISSN:1946-6242
Souza Monteiro de Araujo D.; De Logu F.; Adembri C.; Rizzo S.; Janal M.N.; Landini L.; Magi A.; Mattei G.; Cini N.; Pandolfo P.; Geppetti P.; Nassini R.; Calaza K.C. (2020). TRPA1 mediates damage of the retina induced by ischemia and reperfusion in mice. CELL DEATH & DISEASE, vol. 11, pp. 0-0, ISSN:2041-4889
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Magi, Alberto; Giangregorio, Tania; Semeraro, Roberto; Carangelo, Giulia; Palombo, Flavia; Romeo, Giovanni; Seri, Marco; Pippucci, Tommaso (2020). AUDACITY: A comprehensive approach for the detection and classification of Runs of Homozygosity in medical and population genomics. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, vol. 18, pp. 1956-1967, ISSN:2001-0370
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De Cario, Rosina; Kura, Ada; Suraci, Samuele; Magi, Alberto; Volta, Andrea; Marcucci, Rossella; Gori, Anna Maria; Pepe, Guglielmina; Giusti, Betti; Sticchi, Elena (2020). Sanger Validation of High-Throughput Sequencing in Genetic Diagnosis: Still the Best Practice?. FRONTIERS IN GENETICS, vol. 11, pp. 0-0, ISSN:1664-8021
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Bartalucci, Niccolò; Romagnoli, Simone; Contini, Elisa; Marseglia, Giuseppina; Magi, Alberto; Guglielmelli, Paola; Pelo, Elisabetta; Vannucchi, Alessandro M (2019). Long Reads, Short Time: Feasibility of Prenatal Sample Karyotyping by Nanopore Genome Sequencing. CLINICAL CHEMISTRY, vol. 65, pp. 1605-1608-1608, ISSN:0009-9147
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Giunti, Laura; Da Ros, Martina; De Gregorio, Veronica; Magi, Alberto; Landini, Samuela; Mazzinghi, Benedetta; Buccoliero, Anna Maria; Genitori, Lorenzo; Giglio, Sabrina; Sardi, Iacopo (2019). A microRNA profile of pediatric glioblastoma: The role of NUCKS1 upregulation. MOLECULAR AND CLINICAL ONCOLOGY, vol. 10 (3), pp. 331-338, ISSN:2049-9450, SPANDIDOS PUBL LTD: POB 18179, ATHENS, 116 10, GREECE
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Bolognini, Davide; Sanders, Ashley; Korbel, Jan O; Magi, Alberto; Benes, Vladimir; Rausch, Tobias (2019). VISOR: a versatile haplotype-aware structural variant simulator for short and long read sequencing. BIOINFORMATICS, pp. 0-0, ISSN:1367-4803
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Bartalucci, N; Mannelli, F; Contini, E; Romagnoli, S; Gianfaldoni, G; Scappini, B; Pelo, E; Pancani, F; Magi, A; Bosi, A; Guglielmelli, P; Vannucchi, AM (2019). THIRD GENERATION SEQUENCING OF NORMAL KARYOTYPE ACUTE MYELOID LEUKEMIA: IMPLICATIONS FOR PROGNOSIS. In: HAEMATOLOGICA, FERRATA STORTI FOUNDATION, vol. 104, pp. 12-12.
Benelli, Matteo; Magi, Alberto; Romagnoli, Dario; Franceschini, Gian Marco; Biagioni, Chiara; Migliaccio, Ilenia; Malorni, Luca; Leo, Angelo Di; Demichelis, Francesca (2019). Abstract 2471: Pan-cancer catalog of Differentially Methylated Regions by Rocker-meth, a new computational method. In: Cancer Research, AMER ASSOC CANCER RESEARCH, vol. 79, pp. 2471-2471.
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Bolognini D.; Bartalucci N.; Mingrino A.; Vannucchi A.M.; Magi A. (2019). NANOR: A user-friendly R package to analyze and compare nanopore sequencing data. PLOS ONE, vol. 14, pp. 1-12, ISSN:1932-6203
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Accesso ONLINE all'editore
Semeraro, Roberto; Magi, Alberto (2019). PyPore: a python toolbox for nanopore sequencing data handling. BIOINFORMATICS, vol. 35, pp. 4445-4447, ISSN:1367-4811
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Bolognini D.; Semeraro R.; Magi A. (2019). Versatile Quality Control Methods for Nanopore Sequencing. EVOLUTIONARY BIOINFORMATICS ONLINE, vol. 15, pp. 1-3, ISSN:1176-9343
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Accesso ONLINE all'editore
Paola Guglielmelli, MD PhD, Niccolò Bartalucci, PhDBSc, Elisa Contini, PhD, Giada Rotunno, PhD, Annalisa Pacilli, PhD, Simone Romagnoli, BSc, Lara Mannelli, MD, Francesco Mannelli, MD, Giacomo Coltro, MD, Alessandro Pancrazzi, PhD, Valentina Ariu, BSci, Sara Fiaccabrino, Roberto Semeraro, Alberto Magi, PhD, Carmela Mannarelli, PhD, Francesca Gesullo, BSci, Chiara Paoli, PhD, Alessandro M. Vannucchi, MD (2019). Involvement of RUNX1 Pathway Is a Common Event in the Leukemic Transformation of Chronic Myeloproliferative Neoplasms (MPNs). BLOOD, pp. 0-0, ISSN:0006-4971
Mini E.; Lapucci A.; Perrone G.; D'Aurizio R.; Napoli C.; Brugia M.; Landini I.; Tassi R.; Picariello L.; Simi L.; Mancini I.; Messerini L.; Magi A.; Pinzani P.; Mazzei T.; Tonelli F.; Nobili S. (2019). RNA sequencing reveals PNN and KCNQ1OT1 as predictive biomarkers of clinical outcome in stage III colorectal cancer patients treated with adjuvant chemotherapy. INTERNATIONAL JOURNAL OF CANCER, pp. 0-0, ISSN:0020-7136, Wiley-Liss Inc.:
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Accesso ONLINE all'editore
Magi, Alberto; Bolognini, Davide; Bartalucci, Niccoló; Mingrino, Alessandra; Semeraro, Roberto; Giovannini, Luna; Bonifacio, Stefania; Parrini, Daniela; Pelo, Elisabetta; Mannelli, Francesco; Guglielmelli, Paola; Vannucchi, Alessandro Maria (2019). Nano-GLADIATOR: real-time detection of copy number alterations from nanopore sequencing data. BIOINFORMATICS, pp. 1-9, ISSN:1367-4803
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Magi A.; Masselli M.; Sala C.; Guerriero A.; Laise P.; Puccini B.; Rigacci L.; Breschi C.; Crociani O.; Pillozzi S.; Arcangeli A.; Serena Pillozzi (2019). The ion channels and transporters gene expression profile indicates a shift in excitability and metabolisms during malignant progression of Follicular Lymphoma. SCIENTIFIC REPORTS, vol. 9, pp. 0-0, ISSN:2045-2322
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Accesso ONLINE all'editore
Semeraro R.; Orlandini V.; Magi A. (2018). Xome-Blender: A novel cancer genome simulator. PLOS ONE, vol. 13, pp. e0194472-0, ISSN:1932-6203
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Accesso ONLINE all'editore
D'Aurizio R.; Semeraro R.; Magi A. (2018). Using XCAVATOR and EXCAVATOR2 to Identify CNVs from WGS, WES, and TS Data. Current Protocols in Human Genetics, vol. 98, pp. e65-0
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Accesso ONLINE all'editore
Lulli, Matteo; Cialdai, Francesca; Vignali, Leonardo; Monici, Monica; Luzzi, Sara; Cicconi, Alessandro; Cacchione, Stefano; Magi, Alberto; Di Gesualdo, Federico; Balsamo, Michele; Vukich, Marco; Neri, Gianluca; Donati, Alessandro; Capaccioli, Sergio (2018). The Coenzyme Q10 (CoQ10) as Countermeasure for Retinal Damage Onboard the International Space Station: the CORM Project. MICROGRAVITY, SCIENCE AND TECHNOLOGY, pp. 1-7, ISSN:0938-0108
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Melloni, Giorgio E.M.; Guida, Alessandro; Curigliano, Giuseppe; Botteri, Edoardo; Esposito, Angela; Kamal, Maude; Le Tourneau, Christoph; Riva, Laura; Magi, Alberto; de Maria, Ruggero; Pelicci, Piergiuseppe; Mazzarella, Luca (2018). Precision Trial Drawer, a Computational Tool to Assist Planning of Genomics-Driven Trials in Oncology. JCO PRECISION ONCOLOGY, vol. 2, pp. 1-16, ISSN:2473-4284
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Sticchi, Elena; De Cario, Rosina; Magi, Alberto; Giglio, Sabrina; Provenzano, Aldesia; Nistri, Stefano; Pepe, Guglielmina; Giusti, Betti (2018). Bicuspid Aortic Valve: Role of Multiple Gene Variants in Influencing the Clinical Phenotype. BIOMED RESEARCH INTERNATIONAL, vol. 2018, pp. 0-0, ISSN:2314-6133
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Accesso ONLINE all'editore
Fuselli S.; Baptista R.P.; Panziera A.; Magi A.; Guglielmi S.; Tonin R.; Benazzo A.; Bauzer L.G.; Mazzoni C.J.; Bertorelle G. (2018). A new hybrid approach for MHC genotyping: high-throughput NGS and long read MinION nanopore sequencing, with application to the non-model vertebrate Alpine chamois (Rupicapra rupicapra). HEREDITY, vol. 121, pp. 293-303, ISSN:0018-067X
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Accesso ONLINE all'editore
Mazzarella, L; D'aurizio, R; Frige, G; Guida, A; Belloni, E; Marino, E; Bernard, L; Pelicci, P; Magi, A (2017). 5Genome-wide identification of actionable copy number alterations from targeted sequencing panels with Excavator2. ANNALS OF ONCOLOGY, vol. 28, pp. 0-0, ISSN:0923-7534
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Mazzarella, L; Melloni, G; Guida, A; Curigliano, G; Botteri, E; Esposito, A; Kamal, M; Le Tourneau, C; Magi, A; Riva, L; Pelicci, P (2017). 6Precision Trial Designer: A computational tool to assist in the design of genomics-driven trials in oncology. ANNALS OF ONCOLOGY, vol. 28, pp. 0-0, ISSN:0923-7534
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Magi A.; Pippucci T.; Sidore C. (2017). XCAVATOR: Accurate detection and genotyping of copy number variants from second and third generation whole-genome sequencing experiments. BMC GENOMICS, vol. 18, pp. 0-0, ISSN:1471-2164
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Accesso ONLINE all'editore
L. Mazzarella, R. D’aurizio, G. Frige, A. Guida, E. Belloni, E. Marino, L. Bernard1,P. Pelicci, A. Magi (2017). 3Precision systems medicine in urological Tumors – Molecular profiling and functional testing. ANNALS OF ONCOLOGY, vol. 28, pp. 0-0, ISSN:0923-7534
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Orlandini, Valerio; Provenzano, Aldesia; Giglio, SABRINA RITA; Magi, Alberto (2017). SLMSuite: a suite of algorithms for segmenting genomic profiles. BMC BIOINFORMATICS, pp. 0-0, ISSN:1471-2105
Giunti, Laura; Da Ros, Martina; Iorio, Anna Lisa; Magi, Alberto; Mazzinghi, Benedetta; Giglio, Sabrina; Sardi, Iacopo (2017). GENE-03. MICRORNAS PROFILE IN PAEDIATRIC GBMS. NEURO-ONCOLOGY, vol. 19, pp. iv18-iv18, ISSN:1522-8517
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Giusti, Betti; Sticchi, Elena; DE CARIO, Rosina; Magi, Alberto; Nistri, Stefano; Pepe, Guglielmina (2017). Genetic bases of bicuspid aortic valve: The contribution of traditional and high-throughput sequencing approaches on research and diagnosis. FRONTIERS IN PHYSIOLOGY, vol. 8, pp. 0-0, ISSN:1664-042X
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Accesso ONLINE all'editore
Magi, Alberto; Semeraro, Roberto; Mingrino, Alessandra; Giusti, Betti; D'Aurizio, Romina (2017). Nanopore sequencing data analysis: state of the art, applications and challenges. BRIEFINGS IN BIOINFORMATICS, pp. 0-0, ISSN:1467-5463
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Merello E.; Tattini L.; Magi A.; Accogli A.; Piatelli G.; Pavanello M.; Tortora D.; Cama A.; Kibar Z.; Capra V.; De Marco P. (2017). Exome sequencing of two Italian pedigrees with non-isolated Chiari malformation type i reveals candidate genes for cranio-facial development. EUROPEAN JOURNAL OF HUMAN GENETICS, vol. 25, pp. 952-959, ISSN:1018-4813
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Magi, Alberto; Giusti, Betti; Tattini, Lorenzo (2016). Characterization of MinION nanopore data for resequencing analyses. BRIEFINGS IN BIOINFORMATICS, vol. 18, pp. 940-953, ISSN:1467-5463
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Mini, E.; D’ Aurizio, R.; Perrone, G.; Magi, A.; Lapucci, A.; Tassi, R.; Napoli, C.; Picariello, L.; Landini, I.; Nobili, S. (2016). RNA sequencing reveals a distinct transcriptomic profile predictive of clinical outcome in stage III colorectal cancer patients treated with adjuvant chemotherapy. EUROPEAN JOURNAL OF CANCER, vol. 61, pp. S199-S199, ISSN:0959-8049
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Pellegrini, Marco; Magi, Alberto; Iliopoulos, Costas S (2016). Editorial: Repetitive Structures in Biological Sequences: Algorithms and Applications. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, vol. 4, pp. 0-0, ISSN:2296-4185
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D'Aurizio, Romina; Pippucci, Tommaso; Tattini, Lorenzo; Giusti, Betti; Pellegrini, Marco; Magi, Alberto (2016). Enhanced copy number variants detection from whole-exome sequencing data using EXCAVATOR2. NUCLEIC ACIDS RESEARCH, pp. gkw695-0, ISSN:0305-1048
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Accesso ONLINE all'editore
Tassi, R; Mini, E; D'Aurizio, R; Perrone, G; Magi, A; Lapucci, A; Napoli, C; Picariello, L; Brugia, M; Landini, I; Mazzei, T; Tonelli, F; Nobili, S (2016). Global gene expression profile reveals a distinct transcriptomic profile predictive of clinical outcome in stage III colorectal cancer patients treated with adjuvant chemotherapy. ANNALS OF ONCOLOGY, vol. 27, pp. 43-43, ISSN:0923-7534
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Tassi, R.; Mini, E.; D'Aurizio, R.; Perrone, G.; Magi, A.; Lapucci, A.; Napoli, C.; Picariello, L.; Brugia, M.; Landini, I.; Mazzei, T.; Tonelli, F.; Nobili, S. (2016). D13Global gene expression profile reveals a distinct transcriptomic profile predictive of clinical outcome in stage III colorectal cancer patients treated with adjuvant chemotherapy. ANNALS OF ONCOLOGY, vol. 27, pp. iv43-iv43, ISSN:0923-7534
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Sticchi, Elena; Magi, Alberto; Kamstrup, Pia R.; Marcucci, Rossella; Prisco, Domenico; Martinelli, Ida; Mannucci, Pier Mannuccio; Abbate, Rosanna; Giusti, Betti (2016). Apolipoprotein(a) kringle-IV type 2 copy number variation is associated with venous thromboembolism. PLOS ONE, vol. 11, pp. e0149427-0, ISSN:1932-6203
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Accesso ONLINE all'editore
Mini, E; D’Aurizio, R; Perrone, G; Magi, A; Lapucci, A; Tassi, R; Napoli, C; Picariello, L; Landini, I; Brugia, M; Mazzei, T; Tonelli, F; Nobili, S (2016). A transcriptomic profile predicts clinical outcome in stage III colorectal cancer patients treated with adjuvant chemotherapy. ANNALS OF ONCOLOGY, vol. 27, pp. 575-575, ISSN:0923-7534
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Palombo, Flavia; Al-Wardy, Nadia; Ruscone, Guido Alberto Gnecchi; Oppo, Manuela; Kindi, Mohammed Nasser Al; Angius, Andrea; Al Lamki, Khalsa; Girotto, Giorgia; Giangregorio, Tania; Benelli, Matteo; Magi, Alberto; Seri, Marco; Gasparini, Paolo; Cucca, Francesco; Sazzini, Marco; Al Khabori, Mazin; Pippucci, Tommaso; Romeo, Giovanni (2016). A novel founder MYO15A frameshift duplication is the major cause of genetic hearing loss in Oman. JOURNAL OF HUMAN GENETICS, pp. 0-0, ISSN:1434-5161
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Pippucci, Tommaso; Licchetta, Laura; Baldassari, Sara; Palombo, Flavia; Menghi, Veronica; D'Aurizio, Romina; Leta, Chiara; Stipa, Carlotta; Boero, Giovanni; D'Orsi, Giuseppe; Magi, Alberto; Scheffer, Ingrid; Seri, Marco; Tinuper, Paolo; Bisulli, Francesca (2015). Epilepsy with auditory features: A heterogeneous clinico-molecular disease. NEUROLOGY. GENETICS, vol. 1, pp. e5-0, ISSN:2376-7839
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Magi, Alberto; D'Aurizio, Romina; Palombo, Flavia; Cifola, Ingrid; Tattini, Lorenzo; Semeraro, Roberto; Pippucci, Tommaso; Giusti, Betti; Romeo, Giovanni; Abbate, Rosanna; Gensini, Gian Franco (2015). Characterization and identification of hidden rare variants in the human genome. BMC GENOMICS, vol. 16, pp. 0-0, ISSN:1471-2164
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Tattini, Lorenzo; D'Aurizio, Romina; Magi, Alberto (2015). Detection of Genomic Structural Variants from Next-Generation Sequencing Data. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, vol. 3, pp. 0-0, ISSN:2296-4185
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Pippucci T; Magi A; Gialluisi A; Romeo G. (2014). Detection of runs of homozygosity from whole exome sequencing data: state of the art and perspectives for clinical, population and epidemiological studies.. HUMAN HEREDITY, vol. 77, pp. 63-72, ISSN:0001-5652
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Giunti L;Pantaleo M;Sardi I;Provenzano A;Magi A;Cardellicchio S;Castiglione F;Tattini L;Novara F;Buccoliero AM;de Martino M;Genitori L;Zuffardi O;Giglio S (2014). Genome-wide copy number analysis in pediatric glioblastoma multiforme.. AMERICAN JOURNAL OF CANCER RESEARCH, vol. 4, pp. 293-303, ISSN:2156-6976
Magi, Alberto (2014). H3M2: Detection of runs of homozygosity from whole-exome sequencing data. JOURNAL OF BIOTECHNOLOGY, vol. 185, pp. S15-0, ISSN:0168-1656
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Magi A;Tattini L;Palombo F;Benelli M;Gialluisi A;Giusti B;Abbate R;Seri M;Gensini GF;Romeo G;Pippucci T (2014). H3M2: detection of runs of homozygosity from whole-exome sequencing data.. BIOINFORMATICS, vol. 30, pp. 2852-2859, ISSN:1367-4803
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A. Magi; L. Tattini; I. Cifola; R. D'Aurizio; M. Benelli; E. Mangano; C. Battaglia; E. Bonora; A. Kurg; M. Seri; P. Magini; B. Giusti; G. Romeo; T. Pippucci; G. De Bellis; R. Abbate; G.F. Gensini (2013). EXCAVATOR: detecting copy number variants from whole-exome sequencing data. GENOME BIOLOGY, vol. 14, pp. R120-R120, ISSN:1474-760X
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A. Gandolfi; M. Benelli; A. Magi; S. Chiti (2013). Moment estimation in discrete shifting level model applied to fast array-CGH segmentation. STATISTICA NEERLANDICA, vol. 67 Issue 3, pp. 227-262, ISSN:0039-0402
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Mannelli F; Bencini S; Peruzzi B; Cutini I; Sanna A; Benelli M; Magi A; Gianfaldoni G; Rotunno G; Carrai V; Gelli AM; Valle V; Santini V; Notaro R; Luzzatto L; Bosi A. (2013). A systematic analysis of bone marrow cells by flow cytometry defines a specific phenotypic profile beyond GPI deficiency in paroxysmal nocturnal hemoglobinuria.. CYTOMETRY. PART B, CLINICAL CYTOMETRY, vol. 84, pp. 71-81, ISSN:1552-4949
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Giusti, B; Margheri, F; Rossi, L; Lapini, I; Magi, A; Serratì, S; Chillà, A; Laurenzana, A; Magnelli, L; Calorini, L; Bianchini, F; Fibbi, G; Abbate, R; Del Rosso, M (2013). Desmoglein-2-integrin Beta-8 interaction regulates actin assembly in endothelial cells: deregulation in systemic sclerosis. PLOS ONE, vol. 8, pp. 1-13, ISSN:1932-6203
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Giusti, Betti; Margheri, Francesca; Rossi, Luciana; Lapini, Ilaria; Magi, Alberto; Serratã¬, Simona; Chillã , Anastasia; Laurenzana, Anna; Magnelli, Lucia; Calorini, Lido; Bianchini, Francesca; Fibbi, Gabriella; Abbate, Rosanna; Mario Del, Rosso (2013). Correction: Desmoglein-2-integrin Beta-8 interaction regulates actin assembly in endothelial cells: Deregulation in Systemic sclerosis (PLoS ONE (2013) 8, 7, (e68117) doi: 10.1371/journal.pone.0068117). PLOS ONE, vol. 8, pp. 0-0, ISSN:1932-6203
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Marseglia G; Scordo MR; Pescucci C; Nannetti G; Biagini E; Scandurra V; Gerundino F; Magi A; Benelli M; Torricelli F. (2012). 372 kb microdeletion in 18q12.3 causing SETBP1 haploinsufficiency associated with mild mental retardation and expressive speech impairment.. EUROPEAN JOURNAL OF MEDICAL GENETICS, pp. 216-221, ISSN:1769-7212
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Benelli M;Pescucci C;Marseglia G;Severgnini M;Torricelli F;Magi A (2012). Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript.. BIOINFORMATICS, pp. 3232-3239, ISSN:1367-4803
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Striano P; Coppola A; Paravidino R; Malacarne M; Gimelli S; Robbiano A; Traverso M; Pezzella M; Belcastro V; Bianchi A; Elia M; Falace A; Gazzerro E; Ferlazzo E; Freri E; Galasso R; Gobbi G; Molinatto C; Cavani S; Zuffardi O; Striano S; Ferrero GB; Silengo M; Cavaliere ML; Benelli M; Magi A; Piccione M; Dagna Bricarelli F; Coviello DA; Fichera M; Minetti C; Zara F. (2012). Clinical significance of rare copy number variations in epilepsy: a case-control survey using microarray-based comparative genomic hybridization.. ARCHIVES OF NEUROLOGY, pp. 322-330, ISSN:0003-9942
Magi A, Tattini L, Benelli M, Giusti B, Abbate R, Ruffo S (2012). WNP: A Novel Algorithm for Gene Products Annotation from Weighted Functional Networks.. PLOS ONE, vol. 7, pp. 38767-38772, ISSN:1932-6203
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B. Giusti;A. Vestrini; C. Poggi; A. Magi; E. Pasquini; R. Abbate; C. Dani (2012). Genetic polymorphisms of antioxidant enzymes as risk factors for oxidative stress-associated complications in preterm infants.. FREE RADICAL RESEARCH, vol. 46, pp. 1130-1139, ISSN:1071-5762
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A. Magi;L. Tattini;T. Pippucci;F. Torricelli;M. Benelli (2012). Read count approach for DNA copy number variants detection.. BIOINFORMATICS, vol. 28, pp. 470-478, ISSN:1367-4803
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Mannelli F;Bencini S;Peruzzi B;Cutini I;Sanna A;Benelli M;Magi A;Gianfaldoni G;Rotunno G;Carrai V;Gelli AM;Valle V;Santini V;Notaro R;Luzzatto L;Bosi A (2012). A systematic analysis of bone marrow cells by flow cytometry defines a specific phenotypic profile beyond GPI deficiency in paroxysmal nocturnal hemoglobinuria.. CYTOMETRY. PART B, CLINICAL CYTOMETRY, pp. 1-2, ISSN:1552-4949
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T. Pippucci;M. Benelli;A. Magi;P. L. Martelli;P. Magini;F. Torricelli;R. Casadio;M. Seri;G. Romeo (2011). EX-HOM (EXome HOMozygosity): A Proof of Principle.. HUMAN HEREDITY, vol. 72, pp. 45-53, ISSN:0001-5652
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C. Donati; G. Marseglia; A. Magi; S. Serratì; F. Cencetti; C. Bernacchioni; G. Nannetti; M. Benelli; S. Brunelli; F. Torricelli; G. Cossu; P. Bruni (2011). Sphingosine 1-phosphate induces differentiation of mesoangioblasts towards smooth muscle. A role for GATA6.. PLOS ONE, vol. ..., pp. 0-0, ISSN:1932-6203
A. Magi;M. Benelli;S. Yoon;F. Roviello;F. Torricelli (2011). Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm.. NUCLEIC ACIDS RESEARCH, vol. 39(10):e65, pp. 0-0, ISSN:0305-1048
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Magi A.; Benelli M.; Gozzini A.; Girolami F.; Torricelli F.; Brandi M.L. (2010). Bioinformatics for Next Generation Sequencing Data. GENES, pp. 294-307, ISSN:2073-4425
A. Magi;M. Benelli;G. Marseglia;G. Nannetti;M. R. Scordo;F. Torricelli (2010). A shifting level model algorithm that identifies aberrations in array-CGH data. BIOSTATISTICS, vol. 11, pp. 265-280, ISSN:1465-4644, OXFORD UNIV PRESS: GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
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Rossi L, Lapini I, Magi A, Pratesi G, Lavitrano M, Biasi GM, Pulli R, Pratesi C, Abbate R, Giusti B (2010). Carotid artery disease: Novel pathophysiological mechanisms identified by gene-expression profiling of peripheral blood. EUROPEAN JOURNAL OF VASCULAR AND ENDOVASCULAR SURGERY, vol. 40, pp. 549-558, ISSN:1078-5884
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B.Giusti; C.Saracini; P.Bolli; A.Magi; I.Martinelli; F.Peyvandi; M.Rasura; M.Volpe; LA.Lotta; S.Rubattu; P.M.Mannucci; R.Abbate (2010). Early-onset ischaemic stroke: analysis of 58 polymorphisms in 17 genes involved in methionine metabolism. THROMBOSIS AND HAEMOSTASIS, vol. 104, pp. 231-242, ISSN:0340-6245
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M. Benelli;G. Marseglia;G. Nannetti;R. Paravidino;F. Zara;F. D. Bricarelli;F. Torricelli;A. Magi (2010). A very fast and accurate method for calling aberrations in array-CGH data.. BIOSTATISTICS, vol. 11, pp. 515-518, ISSN:1465-4644
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A.P. Cellai; D. Lami; A. Magi; A.A. Liotta; A. Rogolino; E. Antonucci ; B. Bandinelli; R. Abbate; D. Prisco (2010). Assessment of fibrinolytic activity by measuring the lysis time of a tissue-factor-induced clot: a feasibility evaluation.. CLINICAL AND APPLIED THROMBOSIS-HEMOSTASIS, vol. 16, pp. 337-344, ISSN:1076-0296
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Giusti B; Marini M; Rossi L; Lapini I; Magi A; Capalbo A; Lapalombella R; di Tullio S; Samaja M; Esposito F; Margonato V; Boddi M; Abbate R; Velcsteinas A (2009). Gene expression profile of rat left ventricles reveals persisting changes following chronic mild exercise protocol: implications for cardioprotection. BMC GENOMICS, vol. 10, pp. 342-348, ISSN:1471-2164
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Giusti B; Rossi L; Lapini I; Magi A; Pratesi G; Lavitrano M; Blasi GM; Pulli R; Pratesi C; Abbate R (2009). Gene expression profiling of peripheral blood in patients with abdominal aortic aneurysm. EUROPEAN JOURNAL OF VASCULAR AND ENDOVASCULAR SURGERY, vol. 38, pp. 104-112, ISSN:1078-5884
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B.Giusti; C.Saracini; P.Bolli; A.Magi; I.Sestini; E.Sticchi; G.Pratesi; R.Pulli; C.Pratesi; R.Abbate (2008). Genetic analysis of 56 polymorphisms in 17 genes involved in methionine metabolism in patients with abdominal aortic aneurysm.. JOURNAL OF MEDICAL GENETICS, vol. 45, pp. 721-730, ISSN:0022-2593
B.Giusti; I.Sestini; C.Saracini; E.Sticchi; P.Bolli; A.Magi; AM.Gori; R.Marcucci; GF.Gensini; R.Abbate (2008). High-throughput multiplex single-nucleotide polymorphism (SNP) analysis in genes involved in methionine metabolism. BIOCHEMICAL GENETICS, vol. 46, pp. 406-423, ISSN:0006-2928
M.Blangiardo; S.Toti; B.Giusti; R.Abbate; A.Magi; F.Poggi; L.Rossi; F.Torricelli; A.Biggeri. (2006). Using a calibration experiment to assess gene-specific information: full Bayesian and empirical Bayesian models for two-channel microarray data.. BIOINFORMATICS, vol. 22, pp. 50-57, ISSN:1367-4803
Giusti B;Fibbi G;Margheri F;Serratì S;Rossi L;Poggi F;Lapini I;Magi A;Del Rosso A;Cinelli M;Guiducci S;Kahaleh B;Bazzichi L;Bombardieri S;Matucci Cerinic M;Gensini GF;Del Rosso M;Abbate R (2006). A model of anti-angiogenesis: differential transcriptosome profiling of microvascular endothelial cells from diffuse systemic sclerosis patients.. ARTHRITIS RESEARCH & THERAPY, vol. 8, pp. 115-115, ISSN:1478-6354
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B.GIUSTI; S.SERRATI'; F.MARGHERI; L.PAPUCCI; L.ROSSI; F.POGGI; A.MAGI; A.DEL ROSSO; M.CINELLI; S.GUIDUCCI; B.KAHALEH; M.MATUCCI CERINIC; R.ABBATE; G. FIBBI; M.DEL ROSSO (2005). The antiangiogenic tissue kallikrein pattern of endothelial cells in systemic sclerosis.. ARTHRITIS AND RHEUMATISM, vol. 52, pp. 3618-3628, ISSN:0004-3591, Lippincott, Williams & Wilkins:530 Walnut Street:Philadelphia, PA 19106:(800)638-3030, (301)223-2300, EMAIL: orders@lww.com, INTERNET: http://www.lww.com, Fax: (301)223-2320, (301)223-2320:
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